Below you can find the list of INFLANET scientific publications:
Univeristy of Montpellier:
Leon-Icaza AS, Frétaud M, Cornélie S, Bureau C , Yatime Y, Floto AR , Renshaw SA , Herrmann J-L, Langevin C , Cougoule C , Bernut A (2025) Curcumin-mediated NRF2 induction limits inflammatory damage in, preclinical models of cystic fibrosis. Biomed Pharmacother. 2025 May:186:117957. DOI: 10.1016/j.biopha.2025.117957
Giulia Lupi, Seol Ah Park, Martin Ambroz, Resul Ozbilgic, Mai Nguyen Chi, Georges Lutfalla, Karol Mikula, Mathematical and numerical methods for understanding immune cell motion during wound healing, 2025, arXiv, https://arxiv.org/abs/2503.10552
Jade Leiba, Tamara Sipka, Christina Begon-Pescia, Matteo Bernardello, Sofiane Tairi, Lionello Bossi, Anne-Alicia Gonzalez, Xavier Mialhe, Emilio J Gualda, Pablo Loza-Alvarez, Anne Blanc-Potard, Georges Lutfalla, Mai E Nguyen-Chi: “Dynamics of macrophage polarization support Salmonella persistence in a whole living organism”, eLife, 2024
Sipka T., Park S.A.#, Ozbilgic R.#, Balas L., Durand T., Mikula K., Lutfalla G., Nguyen-Chi M., 2022. Macrophages undergo a behavioural switch during wound healing in zebrafish. Free Radical Biology and Medicine. 2022 Nov 1;192:200-212.
Leiba J., Ozbilgic R., Hernandez L., Demou M., Lutfalla G., Yatime L., Nguyen-Chi M.: Molecular Actors of Inflammation and Their Signaling Pathways: Mechanistic Insights from Zebrafish, Biology 2023, 12(2) 153, Published 19 January 2023
Institut Pasteur:
Jean-Pierre Levraud, John F. Rawls & Anne E. Clatworthy: Using zebrafish to understand reciprocal interactions between the nervous and immune systems and the microbial world, Journal of Neuroinflammation volume 19, Article number: 170 (2022), Published 28 June 2022
Slovak University of Technology:
Giulia Lupi, Karol Mikula, Seol Ah Park, “Macrophages trajectories smoothing by evolving curves”, Tatra Mountains Mathematical Publications, Vol. 87, No. 2, Slovak Academy of Sciences, 2024, pp. 145–170. https://doi.org/10.2478/tmmp-2023-0031.
Giulia Lupi, Karol Mikula, “Vector field reconstruction from sparse samples by triple-Laplacian”. Proceedings of the Conference ALGORITMY 2024, pp. 85–98, available at free repository http://www.iam.fmph.uniba.sk/amuc/ojs/index.php/algoritmy/article/view/2158.
Giulia Lupi, Seol Ah Park, Martin Ambroz, Resul Ozbilgic, Mai Nguyen Chi, Georges Lutfalla, Karol Mikula, “Mathematical and numerical methods for understanding immune cell motion during wound healing”, 2025, arXiv, https://arxiv.org/abs/2503.10552.
Eotvos University Budapest
Partha Sarathi Mondal, Pawan Kumar Mishra, Tamás Vicsek and Shradha Mishra: « Dynamical swirl structures powered by microswimmers in active nematics ». Physica A: Statistical Mechanics and its Applications 659() pp. DOI: https://doi.org/10.1016/j.physa.2024.130338, (2025).
Fatemeh Pakpour and Tamás Vicsek : « Delay-induced phase transitions in active matter ». Physica A 634() pp. DOI: https://doi.org/10.1016/j.physa.2023.129453, (2024).
E. Mehes, E. Mones, M. Varga, A. Zsigmond, B. Biri-Kovacs, L. Nyitray, V. Barone, G. Krens, C-P. Heisenberg and T. Vicsek: « 3D cell segregation geometry and dynamics are governed by tissue surface tension regulation ». Communications Biology Open Access() pp. https://www.nature.com/articles/s42003-023-05181-7, (2023).
The University of Sheffield:
Nils Olijhoek Phd Thesis “In the Eye of the Swarm: Unravelling Neutrophil Swarming Dynamics in Zebrafish”
All supplemental movies can be found and downloaded from the GitHub page as a .zip file. All of the code used for the generation of this thesis can be found in the following online GitHub repository: https://github.com/NilsOlijhoek/In-The-Eye-of-The-Swarm-Thesis-2024.
Radboud UMC:
Maria Parlani, Carolina Jorgez, and Peter Friedl, Plasticity of cancer invasion and energy metabolism, Trends in Cell Biology, 2022
Maria Parlani, Matthew L. Bedell, Antonios G. Mikos, Peter Friedl, and Eleonora Dondossola, Dissecting the recruitment and self-organization of aSMA-positive fibroblasts in the foreign body response, Science Advances, 2022
University of Murcia:
Tyrkalska SD, Pedoto A, Lozano-Gil M, Mulero V. Beneficios y riesgos del inflamasoma, pieza clave de los procesos inflamatorios. The Conversation 2024 Abril 8.
Sylwia D. Tyrkalska, Annamaria Pedoto, Alicia Martìnez-Lòpez,José A.Ros-Lucas, Pablo Mesa-del-Castillo, Sergio Candel, Victoriano Mulero. Silica crystals activate toll-like receptors and inflammasomes to promote local and systemic immune responses in zebrafish. Developmental & Comparative Immunology, Volume 138, January 2023, 104523.
Sylwia D. Tyrkalska, Sergio Candel, Annamaria Pedoto, Diana Garcia-Moreno, Francisca Alcaraz, Maria L. Cayuela, Victoriano Mulero. Zebrafish models of COVID-19, FEMS Microbiology Reviews, Volume 47, Issue 1, January 2023
Sylwia D. Tyrkalska, Alicia Martìnez-Lòpez, Annamaria Pedoto, Sergio Candel, Maria L. Cayuela, Victoriano Mulero. The Spike protein of SARS-CoV-2 signals via Tlr2 in zebrafish, Developmental & Comparative Immunology, Volume 140, March 2023, 104626
Annamaria Pedoto, Juan M. Lozano-Gil, Mai E. Nguyen-Chi, Georges Lutfalla, Diana García-Moreno, Victoriano Mulero, and Sylwia D. Tyrkalska. Macrophage Inflammasome Activation Drives Anti-inflammatory Responses via Neutrophil-Derived ASC Speck Transfer and Gasdermin-Dependent Caspase-1 Inhibition. bioRxiv 2025.01.22.634381.
University of Edinburgh:
Gaofeng Zhu, Mihaly Badonyi, Lina Franklin, Luis Seabra, Gillian I. Rice, Anne-Bolland-Auge, Jean-François Deleuze, Salima El-Chehadeh, Mathieu Anheim, Anne de Saint-Martin, Sandra Pellegrini, Joseph A. Marsh, Yanick J. Crow & Marie-Therese El-Daher. Type I Interferonopathy due to a Homozygous Loss-of-Inhibitory Function Mutation in STAT2, Journal of Clinical Immunology, 8 February 2023
Gaofeng Zhu, MSca ∙ Blaise Didry-Barca, MScb ∙ Luis Seabra, MScb ∙ Gillian I Rice, PhDh ∙ Carolina Uggenti, PhDa ∙ Moncef Touimy, PharmDb ∙ et al. «Autoinflammatory encephalopathy due to PTPN1 haploinsufficiency: a case series.», Volume 24, Issue 3p218-229 March 2025, The Lancet, Neurology.
https://www.thelancet.com/journals/laneur/article/PIIS1474-4422(24)00526-X/fulltext
TatraMed Software s.r.o.
Konan A. Allaly, Jozef Urbán. Automatic path extraction inside the aorta from CT data, Proceedings of ALGORITHMY 2024, pp. 255-263. (available on http://www.iam.fmph.uniba.sk/amuc/ojs/index.php/algoritmy/issue/view/51).
Acquifer (Luxendo)
Satheesan, S., Gehrig, J., & Thomas, L. S. V. (2024). Virtual Orientation Tools (VOTj): Fiji plugins for object centering and alignment. microPublication Biology, 2024. https://doi.org/10.17912/micropub.biology.001221